⇄ Reconza

How to reconcile marketplace settlements with orders

Check that every order was paid at the right amount: matching order exports to Amazon, Flipkart and Shopify-style settlement and fee reports.

Updated 21 October 2026

Marketplaces pay you in batches, net of fees, returns and taxes — and the batch rarely lines up neatly with your orders. Reconciling settlements means proving, order by order, that you received what you should have.

The three reports you need

  1. Your order export from your store, OMS or the marketplace's order report: order ID, date, value. This is your system of record.
  2. The settlement or payment report: which orders each payout covered, and the amount credited per order.
  3. The fee or transaction report: commission, fixed/closing fees, shipping and payment fees, and any adjustments — sometimes in the settlement report, sometimes separate.

In India, also note the taxes the marketplace withholds — TCS under GST and TDS under section 194-O — which reduce the payout but are claimable. Check the current rates against your settlement report rather than assuming them.

Step by step

  1. Normalise order IDs in all three reports. Exports differ in prefixes, dashes and leading zeros; compare a cleaned form (upper-case, no spaces or dashes).
  2. Match the settlement report to orders. Every order that's past its expected settlement date should appear. Those that don't are unpaid.
  3. Match fees to orders and compute the expected net: order value − fees − withheld taxes ± return adjustments.
  4. Compare expected net with the amount actually credited. Differences above a small tolerance are short payments (or over-payments, which will be clawed back later).
  5. Look for duplicates — the same fee or the same return charged twice.
  6. Raise disputes in bulk with order IDs and amounts, and keep the list so you can track recoveries.

Usual reasons for differences

Doing it with Reconza

The marketplace payout workflow takes your order export as the system of record, matches the payout report order-by-order with an amount tolerance, subtracts fees matched from the fee report, and lists unpaid orders, short payments and duplicates for review. You map each report's columns once; after that each payout cycle is upload and review. For a one-off check of two files, use the free comparison tool.

Check every payout, every cycle

Set up a recurring check once. Next time, upload your files, review possible problems and download the result.